Path census
stable
Installation
Path census & structural coefficients
Null models
Approximate statistical inference
Integration with graph-like classes
References
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pathcensus
Path census
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Index
_
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A
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C
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D
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E
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F
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G
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I
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L
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M
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N
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O
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P
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Q
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R
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S
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T
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U
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V
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W
_
__call__() (pathcensus.inference.Inference method)
A
add_index() (pathcensus.inference.Inference static method)
add_stats_index() (pathcensus.inference.Inference method)
adjacency() (in module pathcensus.graph)
adjust_pvalues() (pathcensus.inference.Inference static method)
aggregate_by (pathcensus.inference.Inference attribute)
aggregation (pathcensus.definitions.PathDefinitions property)
aliases (pathcensus.definitions.PathDefinitions property)
(pathcensus.definitions.PathDefinitionsUnweighted property)
C
census() (pathcensus.pathcensus.PathCensus method)
coefs() (pathcensus.pathcensus.PathCensus method)
compcoefs() (pathcensus.pathcensus.PathCensus method)
complementarity() (pathcensus.pathcensus.PathCensus method)
count() (pathcensus.pathcensus.PathCensus method)
count_paths() (pathcensus.pathcensus.PathCensus class method)
count_paths_parallel() (in module pathcensus.core.parallel)
counts (pathcensus.pathcensus.PathCensus attribute)
D
definitions (pathcensus.definitions.PathDefinitions property)
(pathcensus.definitions.PathDefinitionsUnweighted property)
degree (pathcensus.pathcensus.PathCensus property)
dump() (pathcensus.pathcensus.PathCensus method)
E
ecount (pathcensus.pathcensus.PathCensus property)
enumerate() (pathcensus.definitions.PathDefinitions method)
estimate_pvalues() (pathcensus.inference.Inference method)
F
filter_index() (pathcensus.inference.Inference method)
from_dump() (pathcensus.pathcensus.PathCensus class method)
G
get_column_ids() (pathcensus.definitions.PathDefinitions method)
get_column_names() (pathcensus.definitions.PathDefinitions method)
get_counts() (pathcensus.pathcensus.PathCensus method)
get_graph() (pathcensus.pathcensus.PathCensus class method)
get_levels() (pathcensus.inference.Inference method)
get_swap_rules() (pathcensus.definitions.PathDefinitions method)
graph (pathcensus.inference.Inference attribute)
(pathcensus.pathcensus.PathCensus attribute)
GraphABC (class in pathcensus.graph)
I
index_names (pathcensus.inference.Inference attribute)
Inference (class in pathcensus.inference)
Inference.Levels (class in pathcensus.inference)
init_comparison() (pathcensus.inference.Inference method)
L
list() (pathcensus.definitions.PathDefinitions method)
M
mode (pathcensus.pathcensus.PathCensus.Meta attribute)
model (pathcensus.inference.Inference attribute)
module
pathcensus
pathcensus.core
pathcensus.core.graph
pathcensus.core.parallel
pathcensus.core.random
pathcensus.core.types
pathcensus.definitions
pathcensus.graph
,
[1]
pathcensus.inference
,
[1]
pathcensus.nullmodels
pathcensus.nullmodels.base
pathcensus.nullmodels.ubcm
pathcensus.nullmodels.uecm
pathcensus.pathcensus
,
[1]
pathcensus.types
pathcensus.utils
N
n_edges (pathcensus.pathcensus.PathCensus property)
n_nodes (pathcensus.inference.Inference property)
(pathcensus.pathcensus.PathCensus property)
npaths (pathcensus.definitions.PathDefinitions property)
O
other (pathcensus.inference.Inference.Levels attribute)
P
pathcensus
module
PathCensus (class in pathcensus.pathcensus)
pathcensus.core
module
pathcensus.core.graph
module
pathcensus.core.parallel
module
pathcensus.core.random
module
pathcensus.core.types
module
pathcensus.definitions
module
pathcensus.graph
module
,
[1]
pathcensus.inference
module
,
[1]
PathCensus.Meta (class in pathcensus.pathcensus)
pathcensus.nullmodels
module
pathcensus.nullmodels.base
module
pathcensus.nullmodels.ubcm
module
pathcensus.nullmodels.uecm
module
pathcensus.pathcensus
module
,
[1]
pathcensus.types
module
pathcensus.utils
module
PathDefinitions (class in pathcensus.definitions)
PathDefinitionsUnweighted (class in pathcensus.definitions)
PathDefinitionsWeighted (class in pathcensus.definitions)
postprocess() (pathcensus.inference.Inference method)
postprocess_index() (pathcensus.inference.Inference method)
Q
qclosure() (pathcensus.pathcensus.PathCensus method)
qclust() (pathcensus.pathcensus.PathCensus method)
qdf (pathcensus.pathcensus.PathCensus property)
R
register_type() (pathcensus.graph.GraphABC class method)
relclose() (in module pathcensus.utils)
relerr() (in module pathcensus.utils)
resolve() (pathcensus.definitions.PathDefinitions method)
rowsums() (in module pathcensus.utils)
S
set_numba_seed() (in module pathcensus.core.random)
set_seed() (in module pathcensus.utils)
simcoefs() (pathcensus.pathcensus.PathCensus method)
similarity() (pathcensus.pathcensus.PathCensus method)
simulate_null() (pathcensus.inference.Inference method)
statistics (pathcensus.inference.Inference attribute)
stats (pathcensus.inference.Inference.Levels attribute)
strength (pathcensus.pathcensus.PathCensus property)
T
tclosure() (pathcensus.pathcensus.PathCensus method)
tclust() (pathcensus.pathcensus.PathCensus method)
tdf (pathcensus.pathcensus.PathCensus property)
U
undef (pathcensus.pathcensus.PathCensus.Meta attribute)
units (pathcensus.inference.Inference.Levels attribute)
V
vcount (pathcensus.pathcensus.PathCensus property)
W
weighted (pathcensus.pathcensus.PathCensus property)
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